E-MTAB-5063 - Transcription profiling by high throughput sequencing of leaves of inbred line B73 infested with corn leaf aphids

Status
Released on 29 September 2015, last updated on 22 August 2016
Organism
Zea mays
Samples (40)
Protocols (2)
Description
As a response to insect attack, maize (Zea mays) has inducible defenses that involve large changes in gene expression and metabolism. Piercing/sucking insects such as corn leaf aphids (Rhopalosiphum maidis) cause direct damage by acquiring phloem nutrients as well as indirect damage through the transmission of plant viruses. To elucidate the metabolic processes and gene expression changes involved in maize responses to aphid attack, leaves of inbred line B73 were infested with R. maidis for two to 96 hours.
Experiment type
RNA-seq of coding RNA 
Contact
Citation
Dynamic Maize Responses to Aphid Feeding Are Revealed by a Time Series of Transcriptomic and Metabolomic Assays. Tzin V, Fernandez-Pozo N, Richter A, Schmelz EA, Schoettner M, Schafer M, Ahern KR, Meihls LN, Kaur H, Huffaker A, Mori N, Degenhardt J, Mueller LA, Jander G. , PMID:26378100
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-5063.idf.txt
Sample and data relationshipE-MTAB-5063.sdrf.txt
Links