E-MTAB-4896 - Study of the quorum sensing regulon of the acidophilic Acidithiobacillus ferrooxidans ATCC23270 with cDNA microarrays

Status
Submitted on 27 June 2013, last updated on 15 March 2017, released on 15 March 2017
Organism
Acidithiobacillus ferrooxidans ATCC 23270
Samples (16)
Array (1)
Protocols (6)
Description
To address the question of how quorum sensing controls biofilm formation in Acidithiobacillus ferrooxidans ATCC23270, the transcriptome of this organism in conditions in which quorum sensing response is stimulated by a synthetic acyl homoserine lactone (AHL) analogue has been studied. Tetrazole 9c was used in DNA microarray experiments that allowed the identification of genes regulated by quorum sensing signalling, and more particularly those involved in early biofilm formation.
Experiment types
transcription profiling by array, array specific design, dye swap design, growth condition design
Contact
Citation
Insights into the Quorum Sensing Regulon of the Acidophilic Acidithiobacillus ferrooxidans Revealed by Transcriptomic in the Presence of an Acyl Homoserine Lactone Analogue. Sigde Mamani, Danielle Moinier, Yann Denis, Laurent Soulère, Yves Queneau, Emmanuel Talla, Violaine Bonnefoy and Nicolas Guiliani.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-4896.idf.txt
Sample and data relationshipE-MTAB-4896.sdrf.txt
Raw data (1)E-MTAB-4896.raw.1.zip
Array designA-MTAB-592.adf.txt
Links