E-MTAB-485 - Analysis of transcript abundances in Ectocarpus life cycle mutants

Status
Released on 14 January 2012, last updated on 3 May 2014
Organism
Ectocarpus siliculosus
Samples (15)
Array (1)
Protocols (7)
Description
The aim of this experiment was to compare transcript abundances in parthenotes (i.e. organisms derived by parthenogenetic development of gametes) of two life cycle mutants of the brown alga Ectocarpus siliculosus with transcript abundances in the wild type sporophyte and gametophyte generations. This is of interest because the two mutations, immediate upright (imm) and ouroboros (oro), cause partial and almost complete hometic conversion, respectively, of the sporophyte into the gametophyte. imm parthenotes exhibit gametophyte-like morphology during early development but remain sporophytes in functional terms (they do not produce gametes) whereas oro parthenotes behave as functional gametophytes and are morphologically indistinguishable from gametophytes apart from the appearance some minor sporophyte-like features very early in development in some individuals. To minimise genetic background effects the samples for this experiment were derived from a segregating population derived from an imm/IMM oro/ORO sporophyte. Four classes of gametophyte were derived from this sporophyte were IMM/ORO (wild type), imm/ORO, IMM/oro and imm/oro. Parthenomes were bulked to provide a wild type sporophyte sample, samples corresponding to the two individual mutants, plus the double mutant. A wild type gametophyte sample was also compared for comparison. Hybridisations with cDNA derived from these five samples were carried out using a NimbleGen expressed-sequence-tag-(EST-)based microarray carrying probes corresponding to 10,600 of the 16,256 genes identified in the Ectocarpus genome.
Experiment types
transcription profiling by array, all pairs, co-expression, genetic modification
Contact
Citations
OUROBOROS is a master regulator of the gametophyte to sporophyte life cycle transition in the brown alga Ectocarpus. Coelho, Susana M.; Godfroy, Olivier; Arun, Alok; Le Corguillao, Gildas; Peters, Akira F.; Cock, J. Mark. Proc Natl Acad Sci U S A 
OUROBOROS is a master regulator of the gametophyte to sporophyte life cycle transition in the brown alga Ectocarpus. Coelho SM, Godfroy O, Arun A, Le Corguillé G, Peters AF, Cock JM. :11518-11523 (2011), PMID:21709217
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-485.idf.txt
Sample and data relationshipE-MTAB-485.sdrf.txt
Raw data (1)E-MTAB-485.raw.1.zip
Processed data (2)E-MTAB-485.processed.1.zip, E-MTAB-485.processed.2.zip
Array designA-MEXP-1445.adf.txt
Links