E-MTAB-4765 - Transcription profiling by high throughput sequencing of the five principal tissues of the pericarp from tomato fruits at their maximal growth phase

Status
Released on 5 January 2011, last updated on 18 May 2016
Organism
Solanum lycopersicum
Samples (9)
Protocols (2)
Description
Deep transcriptome sequencing of various tomato tissues. We describe the coupling of pyrosequencing technology with laser capture microdissection to characterize the transcriptomes of the five principal tissues of the pericarp from tomato fruits (outer and inner epidermal layers, collenchyma, parenchyma, and vascular tissues) at their maximal growth phase. NOTE: Not all samples from SRP004923 were imported in this accession.
Experiment type
RNA-seq of coding RNA 
Contact
Citation
Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation. Matas AJ, Yeats TH, Buda GJ, Zheng Y, Chatterjee S, Tohge T, Ponnala L, Adato A, Aharoni A, Stark R, Fernie AR, Fei Z, Giovannoni JJ, Rose JK. , PMID:22045915
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-4765.idf.txt
Sample and data relationshipE-MTAB-4765.sdrf.txt
Links