E-MTAB-4722 - 3'-Tag-Seq of Drosophila melanogaster embryos from 82 wild-type strains from the Drosophia Genetic Reference Panel (DGRP) over three time-points during embryogenesis

Status
Last updated on 9 January 2017, released on 10 January 2017
Organism
Drosophila melanogaster
Samples (245)
Protocols (4)
Description
Sequencing of the most 3' end of mRNAs (3'-Tag-Seq) of 82 wild type strains from the Drosophila Genetic reference Panel (DGRP) during embryogenesis was performed. Three different time points (2-4hrs, 6-8hrs and 10 to 12rs after laying) were assayed. 14 biological replicates were performed from independent embryo collections.
Experiment types
RNA-seq of coding RNA, development or differentiation design, population based design
Contacts
Citation
Genetic variants regulating expression levels and isoform diversity during embryogenesis. Cannavò E, Koelling N, Harnett D, Garfield D, Casale FP, Ciglar L, Gustafson HE, Viales RR, Marco-Ferreres R, Degner JF, Zhao B, Stegle O, Birney E, Furlong EE.  (2016), Europe PMC 28024300
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-4722.idf.txt
Sample and data relationshipE-MTAB-4722.sdrf.txt
Links