E-MTAB-4559 - Genetic response of maize silk to pollen tubes growth in comparison to fungal invasion

Status
Last updated on 17 March 2017, released on 17 March 2019
Organism
Zea mays subsp. mays
Samples (24)
Protocols (16)
Description
In this study, RNA-seq based comparative transcriptome analysis was used to study the genetic response of maize silk to pollen tube penetration and in comparison to the fungal invasion of Fusarium graminearum and Ustilago maydis. RNA-seq libraries of 8 tissues were generated from leaf, root, seed, pollen tube, silk, pollinated silk, infected silk with Fusarium and infected silk with Ustilago.
Experiment types
RNA-seq of coding RNA, disease state design, organism part comparison design
Contacts
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-4559.idf.txt
Sample and data relationshipE-MTAB-4559.sdrf.txt
Links