E-MTAB-4355 - Gynandropsis gynandra de-etiolation experiment

Status
Last updated on 27 January 2016, released on 6 February 2016
Organism
Cleome gynandra
Samples (12)
Protocols (6)
Description
Gynandropsis gynandra seedlings were germinated then grown in the dark for seven days on 1/2 MS medium, 22oC. Tissue samples were harvested after 0 and 6 hours exposure to WL (100 mol m2 s1) and frozen at -80oC. RNA was prepared from samples using a QIAGEN Plant RNeasy extraction kit and libraries generated using TruSeq RNA Sample v2 kit. Sequencing was performed at the Department of Biochemistry, University of Cambridge using a NextSeq500 Mid Output 150 cycle.
Experiment types
RNA-seq of coding RNA, development or differentiation design, time series design
Contact
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-4355.idf.txt
Sample and data relationshipE-MTAB-4355.sdrf.txt
Links