E-MTAB-4100 - ChIP-seq analysis of human neuroblastoma cell lines

Status
Last updated on 13 September 2016, released on 25 October 2016
Organism
Homo sapiens
Samples (17)
Protocols (15)
Description
The aim of the experiment is to identify genome wide binding sites for the transcription factor MYCN in MYCN non-amplified and MYCN amplified human neuroblastoma cell lines. Datasets are presented for the ChIP-seq analysis in the tetracycline inducible cell line SH-SY5Y-MYCN (SH-SY5Y/6TR(EU)/pTrex-Dest-30/MYCN), derivative of the parental cell line SH-SY5Y; for noninduced cells and for 24 and 48 hours of Tet induction. Analysis for patinet matched MYCN amplified cell lines SMS-KCN and SMS-KCNR is also included.
Experiment types
ChIP-seq, binding site identification design, time series design
Contact
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-4100.idf.txt
Sample and data relationshipE-MTAB-4100.sdrf.txt
Processed data (20)Click to browse processed data
Links