E-MTAB-3133 - Transcription profiling by array of compare two pairs of Burkholderia cenocepacia ST32 clinical isolates (from cystic fibrosis patients) subjected to cultivation in two different conditions

Status
Last updated on 28 November 2014, released on 27 February 2015
Organism
Burkholderia cenocepacia
Samples (37)
Array (1)
Protocols (10)
Description
Burkholderia cenocepacia sequence type 32 (ST32) represents one of the most globally distributed strains from Bukrholderia cepacia complex (Bcc), which infected 30% of Czech cystic fibrosis (CF) patients. The aim of this study was to compare gene expression in two pairs of ST32 clinical isolates that were subjected to cultivation in two different conditions, characteristic for chronic B. cenocepacia infection in CF patients. ST32 strain is known to be a problematic epidemic strain, which caused a serious outbreak at the Prague CF centre.
Experiment types
transcription profiling by array, development or differentiation design, growth condition design, pathogenicity design, reference design, replicate design, strain or line design
Contacts
Citation
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-3133.idf.txt
Sample and data relationshipE-MTAB-3133.sdrf.txt
Processed data (1)E-MTAB-3133.processed.1.zip
Array designA-MEXP-1182.adf.txt