E-MTAB-3020 - RNA content of transcription factories

Status
Submitted on 12 October 2014, released on 30 October 2015, last updated on 9 November 2016
Organism
Homo sapiens
Samples (18)
Protocols (9)
Description
We have develop a simple fact method to isolate transcription factories and analyzed their RNA content as compared to total poly(A)+ and chromatin associated RNA fractions in presence or absence of pro-inflammatory cytokine.
Experiment types
RNA-seq of coding RNA, RNA-seq of non coding RNA, cell component comparison design, growth condition design, replicate design, stimulus or stress design, time series design
Contacts
Citation
Dissecting the nascent human transcriptome by analyzing the RNA content of transcription factories. Maiwen Caudron-Herger, Peter R. Cook, Karsten Rippe and Argyris Papantonis.
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-3020.idf.txt
Sample and data relationshipE-MTAB-3020.sdrf.txt
Links