E-MTAB-2627 - RNA-Seq of YM155 treated KMB7 wild-type and SLC35F2 knock-out cells

Status
Submitted on 15 May 2013, last updated on 6 June 2014, released on 30 June 2014
Organism
Homo sapiens
Samples (8)
Protocols (5)
Description
SLC35F2 was identified as a transporter of DNA damage inducing agent YM155. We then did a comparative transcriptomics experiment comparing wild-type and SLC35F2 knock-out KBM7 cells.
Experiment type
RNA-seq of coding RNA 
Contacts
Citation
The solute carrier SLC35F2 enables YM155-mediated DNA damage toxicity. Winter GE, Radic B, Mayor-Ruiz C, Blomen VA, Trefzer C, Kandasamy RK, Huber KV, Gridling M, Chen D, Klampfl T, Kralovics R, Kubicek S, Fernandez-Capetillo O, Brummelkamp TR, Superti-Furga G. :768-773 (2014), Europe PMC 25064833
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-2627.idf.txt
Sample and data relationshipE-MTAB-2627.sdrf.txt
Links