E-MTAB-2277 - RNA-seq of coding RNA in human SH-SY5Y cells with shRNA knockdown of RNA-binding protein Unkempt (Unk)

Status
Released on 15 January 2015, last updated on 8 April 2016
Organism
Homo sapiens
Samples (6)
Protocols (5)
Description
RNAseq to assess changes in transcript abundance upon knockdown of the RNA-binding protein Unkempt in human SH-SY5Y cell lines.
Experiment types
RNA-seq of coding RNA, cellular modification design, co-expression, in vitro
Contact
Citations
Translational control of a neuronal morphology program by the RNA-binding zinc finger protein Unkempt. Jernej Murn, Kathi Zarnack, Yawei J. Yang, Elisabeth A. Murphy, Toma゙ Curk, Sihem Cheloufi, Marianna Teplova, Johannes Zuber, Dinshaw J. Patel, Jernej Ule, Nicholas M. Luscombe, Christopher A. Walsh, Yang Shi.
Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt. Murn J, Zarnack K, Yang YJ, Durak O, Murphy EA, Cheloufi S, Gonzalez DM, Teplova M, Curk T, Zuber J, Patel DJ, Ule J, Luscombe NM, Tsai LH, Walsh CA, Shi Y. Genes Dev 29(5):501-512 (2015), PMID:25737280
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-2277.idf.txt
Sample and data relationshipE-MTAB-2277.sdrf.txt
Links