E-MTAB-2060 - Mapping ONECUT1 TF binding with ChIP-exo

Last updated on 9 May 2014, released on 10 May 2014
Mus musculus
Samples (3)
Protocols (5)
The aim of this project is to locate the precise binding of the ONECUT1 transcription factor. NOTE: This study was updated on 7th May 2014. All samples, experiments, runs and files were replaced. This was due to an incorrect reagent being used in the earlier version.
Experiment types
ChIP-seq, ChIP-exo, binding site identification, in vivo, species
Alejandra Medina-Rivera, Edwin J Young, Liis Uuskula-Reimand, Michael D Wilson <michael.wilson@sickkids.ca>
MACE: model based analysis of ChIP-exo. Wang L, Chen J, Wang C, Uusküla-Reimand L, Chen K, Medina-Rivera A, Young EJ, Zimmermann MT, Yan H, Sun Z, Zhang Y, Wu ST, Huang H, Wilson MD, Kocher JP, Li W. :e156 (2014), PMID:25249628
MACE: Model based analysis of ChIP-exo. Liguo Wang, Junsheng Chen, Chen Wang, Liis UuskŸla-Reimand, Kaifu Chen, Edwin J. Young, Alejandra Medina-Rivera, Michael T. Zimmermann, Huihuang Yan, Zhifu Sun, Yuji Zhang, Stephen T. Wu, Haojie Huang, Michael D. Wilson, Jean-Pierre A. Kocher*, Wei Li*.
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-MTAB-2060.idf.txt
Sample and data relationshipE-MTAB-2060.sdrf.txt