E-MTAB-2017 - RNA-seq of coding RNA from Corynebacterium pseudotuberculsis under three stress conditions

Released on 23 November 2013, last updated on 2 May 2014
Corynebacterium pseudotuberculosis
Samples (1)
Protocols (4)
The differential expression profile of the pathogenic bacteria Corynebacterium pseudotuberculosis was evaluated under three stress conditions, based on the environment found inside the host, compared to control condition. Those stress conditions were undertaken in order to better understand the behavior of this bacteria and to discover which genes could be involved with the infectious process. Based on the analysis performed through the use of the next-generation sequencer SOLiD 3 Plus System, we intended to identify potential vaccine and drug targets that could be used to develop new treatments against the disease caseous lymphadenitis, which causes several economic losses worldwide in goats and sheep raising.
Experiment types
RNA-seq of coding RNA, stimulus or stress design
Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses.
Corynebacterium pseudotuberculosis RNA-seq data from abiotic stresses. de Sá PH, Veras AA, Carneiro AR, Barúna RA, Guimarães LC, Pinheiro KC, Pinto AC, Soares SC, Schneider MP, Azevedo V, Silva A, Ramos RT. :963-966 (2015), PMID:26702428
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-MTAB-2017.idf.txt
Sample and data relationshipE-MTAB-2017.sdrf.txt