E-MTAB-1967 - MNase digestion followed by next-generation sequencing (NGS) to analyse the nucleosome profile in both control and Brm knockdown Drosophila melanogaster larvae

Status
Last updated on 6 May 2014, released on 8 May 2014
Organism
Drosophila melanogaster
Samples (2)
Protocols (4)
Description
Drosophila PBAP complex, a form of SWI/SNF class of complexes, played a important role in metamorphosis. We conducted MNase digestion followed by next-generation sequencing (NGS) to analyse the nucleosome profile in both control and Brm knockdown fly larvae.
Experiment types
DNA-seq, cellular modification design, co-expression, in vivo
Contact
Citation
Drosophila Brahma complex remodels nucleosome organizations in multiple aspects. Shi J, Zheng M, Ye Y, Li M, Chen X, Hu X, Sun J, Zhang X, Jiang C. Nucleic Acids Res 42(15):9730-9739 (2014), Europe PMC 25081211
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-1967.idf.txt
Sample and data relationshipE-MTAB-1967.sdrf.txt
Links