E-MTAB-1861 - Candidate luminal B breast cancer genes identified by genome, gene expression and DNA methylation profiling

Status
Released on 1 January 2014, last updated on 3 June 2014
Organism
Homo sapiens
Samples (196)
Arrays (2)
Protocols (6)
Description
To better understand Luminal B subtype we studied in 188 breast cancers of various molecular subtypes, DNA copy number aberrations (CNAs), DNA promoter methylation and gene expression profiles. Please note mRNA expression data already submitted for study: E-GEOD-21653.
Experiment types
comparative genomic hybridization by array, methylation profiling by array, all pairs, binding site identification design, co-expression, disease state design
Contact
Citations
Candidate luminal B breast cancer genes identified by genome, gene expression and DNA methylation profiling. Stephanie CORNEN, Arnaud GUILLE, Jose ADeLAÏDE, Lynda ADDOU-KLOUCHE, Pascal FINETTI, Marie-Rose SAADE, Marwa MANAI, Nadine CARBUCCIA, Ismahane BEKHOUCHE, Anne LETESSIER, Stephane RAYNAUD, Emmanuelle CHARAFE-JAUFFRET, Jocelyne JACQUEMIER, Salvatore SPICUGLIA, Hugues de THE, Patrice VIENS, François BERTUCCI, Daniel BIRNBAUM and Max CHAFFANET.
Candidate luminal B breast cancer genes identified by genome, gene expression and DNA methylation profiling. Cornen S, Guille A, Adélaïde J, Addou-Klouche L, Finetti P, Saade MR, Manai M, Carbuccia N, Bekhouche I, Letessier A, Raynaud S, Charafe-Jauffret E, Jacquemier J, Spicuglia S, de The H, Viens P, Bertucci F, Birnbaum D, Chaffanet M. :e81843 (2014), Europe PMC 24416132
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-1861.idf.txt
Sample and data relationshipE-MTAB-1861.sdrf.txt
Raw data (82)Click to browse raw data
Processed data (1)E-MTAB-1861.processed.1.zip
Array designsA-MEXP-1978.adf.txt, A-MEXP-2178.adf.txt
Links