E-MTAB-1833 - Transcription profiling by array of CUX1 knockdown in LOUCY cells lines

Released on 5 November 2013, last updated on 3 June 2014
Homo sapiens
Samples (4)
Array (1)
Protocols (5)
LOUCY cells were resuspended in Opti-MEM (Gibco) and electroporated in 4 mm cuvettes (300 V, 1000 F; Genepulser XCell, Bio-Rad) using Stealth siRNAs (Ambion) against CUX1 or negative control duplexes. Cells were rested for 15 min following electroporation before dilution into normal RPMI 10 percent FBS growth media. RNA prepared from cells 48-72 h later using an RNeasy mini kit (Qiagen) was used for cDNA preparation for microarrays according to manufacturers instructions (Illumina).
Experiment types
transcription profiling by array, cellular modification design, co-expression design, in vitro design
Inactivating CUX1 mutations promote tumorigenesis. Wong CC, Martincorena I, Rust AG, Rashid M, Alifrangis C, Alexandrov LB, Tiffen JC, Kober C, Chronic Myeloid Disorders Working Group of the International Cancer Genome Consortium, Green AR, Massie CE, Nangalia J, Lempidaki S, Döhner H, Döhner K, Bray SJ, McDermott U, Papaemmanuil E, Campbell PJ, Adams DJ. :33-38 (2014), Europe PMC 24316979
Inactivating CUX1 mutations promotes tumorigenesis.
Investigation descriptionE-MTAB-1833.idf.txt
Sample and data relationshipE-MTAB-1833.sdrf.txt
Raw data (1)E-MTAB-1833.raw.1.zip
Array designA-MEXP-2210.adf.txt