E-MTAB-1750 - MNase-seq of human HepG2 cells to map the location of nucleosomes with or without TGF-beta growth factor treatment

Status
Released on 30 April 2014, last updated on 2 May 2014
Organism
Homo sapiens
Samples (2)
Protocols (6)
Description
We used ultra deep sequencing of MnaseI trated cells to faithfully position nucleosomes before and after treatment with TGFB growth factor for 1h in HepG2-cells.
Experiment types
DNA-seq, high throughput sequencing, in vitro, stimulus or stress
Contacts
Citation
Nucleosome regulatory dynamics in response to TGF-beta. S.Enroth, R.Andersson, M.Bysani, O.Wallerman, S.Termén, B.B.Tuch, F.M. De La Vega, C.H.Heldin, A.Moustakas, J.Komorowski, C.Wadelius. Nucleic Acids Res  (2014)
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-1750.idf.txt
Sample and data relationshipE-MTAB-1750.sdrf.txt
Links