E-MTAB-1664 - RNA-seq of coding RNA of moss Funaria hygrometrica samples from three haploid (gametophyte) stages and three diploid (sporophyte) stages

Last updated on 17 July 2013, released on 17 July 2013
Funaria hygrometrica
Samples (6)
Protocols (5)
We experimentally generated a genome-wide gene expression data. To this end, we first collected samples of three important haploid developmental stages, specifically germinating spores (gametophyte_1), protonemata (gametophyte_2) and young gametophores (gametophyte_3) (four biological replicates each). We also collected three developmental stages of the diploid phase (sporophyte), specifically sporophytes shorter than 5mm (sporophyte_1), elongated needle-like sporophytes (sporophyte_2), and sporophytes with swollen capsules (sporophyte_3)
Experiment types
RNA-seq of coding RNA, all pairs, co-expression, set for the moss Funaria hygrometrica
Efficient purging of deleterious mutations in plants with haploid selfing. Szövényi P, Devos N, Weston DJ, Yang X, Hock Z, Shaw JA, Shimizu KK, McDaniel SF, Wagner A. :1238-1252 (2014), Europe PMC 24879432
Selection Is No More Efficient in Haploid than in Diploid Life Stages of an Angiosperm and a Moss. Peter Szovenyi, Mariana Ricca, Zsofia Hock, Jonathan A Shaw, Kentaro K Shimizu, Andreas Wagner. Mol Biol Evol 30(8):1929 (2013), Europe PMC 23686659
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-MTAB-1664.idf.txt
Sample and data relationshipE-MTAB-1664.sdrf.txt