E-MTAB-1637 - RNA-seq of coding RNA of P. patens gametophores, protonema and protoplasts to investigate the process of peptide generation

Status
Last updated on 7 May 2013, released on 22 April 2014
Organism
Physcomitrella patens
Samples (11)
Protocols (6)
Description
We studied peptide generation process in moss Physcomitrella patens. For this purpose, analysis of peptidome and transcriptome of two different life forms (gametophores and protonema) and also of protoplasts were made.
Experiment types
RNA-seq of coding RNA, all pairs, cell type comparison, co-expression
Contact
Citation
Specific pools of endogenous peptides are present in gametophore, protonema, and protoplast cells of the moss Physcomitrella patens. Fesenko IA, Arapidi GP, Skripnikov AY, Alexeev DG, Kostryukova ES, Manolov AI, Altukhov IA, Khazigaleeva RA, Seredina AV, Kovalchuk SI, Ziganshin RH, Zgoda VG, Novikova SE, Semashko TA, Slizhikova DK, Ptushenko VV, Gorbachev AY, Govorun VM, Ivanov VT. :87 (2015), Europe PMC 25848929
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-1637.idf.txt
Sample and data relationshipE-MTAB-1637.sdrf.txt
Additional data (1)E-MTAB-1637.additional.1.zip
Links