E-MTAB-1415 - ChIP-seq of adult wild-type rat liver cells to study genome wide location of HNF4a, FoxA1 and CEBPA

Status
Released on 30 August 2013, last updated on 14 March 2014
Organism
Rattus norvegicus
Samples (8)
Protocols (4)
Description
This study aims to study genome wide location of HNF4a, FoxA1 and CEBPA in wild type rat liver. Please note that all raw data files for this study were replaced with new versions on 12 March 2014 because the previous versions are corrupted. The corrupted files are associated with ENA run accessions ERR215698 to ERR215705 and should not be used. The correct files are associated with ENA run accessions ERR458085 to ERR458092.
Experiment types
ChIP-seq, ChiP-seq, in vitro, species
Contact
Citations
Cooperativity and Rapid Evolution of Cobound Transcription Factors in Closely Related Mammals. Klara Stefflova, David Thybert, Michael D. Wilson, Ian Streeter, Jelena Aleksic, Panagiota Karagianni, Alvis Brazma, David J. Adams, Iannis Talianidis, John C. Marioni, Paul Flicek, Duncan T. Odom. Cell 154(3):530-540 (2013), Europe PMC 23911320
Cooperativity and Rapid Evolution of Cobound Transcription Factors in Closely Related Mammals. Klara Stefflova, David Thybert, Michael D. Wilson, Ian Streeter, Jelena Aleksic, Panagiota Karagianni, Alvis Brazma, David J. Adams, Iannis Talianidis, John C. Marioni, Paul Flicek, Duncan T. Odom. Cell 154(3):530-540 (2013), Europe PMC 23911320
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-1415.idf.txt
Sample and data relationshipE-MTAB-1415.sdrf.txt
Links