E-MTAB-1414 - ChIP-seq of mouse adult liver cells to investigate transcription factor binding region between five species

Status
Released on 30 August 2013, last updated on 3 May 2014
Organism
Mus caroli, Mus castaneus, Mus musculus, Mus spretus
Samples (23)
Protocols (4)
Description
This study aims to compar transcription factor binding region between five mouse species. Please note that the fastq.gz files for this experiment were updated on 24 December 2013 due to file corruption issues with previous copies (ENA run accessions ERR216016 to ERR216073). The new files are associated with ENA run accessions ERR392411 to ERR392468.
Experiment types
ChIP-seq, ChiP-seq, binding site identification, in vivo, species
Contact
Citations
Cooperativity and Rapid Evolution of Cobound Transcription Factors in Closely Related Mammals. Klara Stefflova, David Thybert, Michael D. Wilson, Ian Streeter, Jelena Aleksic, Panagiota Karagianni, Alvis Brazma, David J. Adams, Iannis Talianidis, John C. Marioni, Paul Flicek, Duncan T. Odom. Cell 154(3):530-540 (2013), Europe PMC 23911320
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-1414.idf.txt
Sample and data relationshipE-MTAB-1414.sdrf.txt
Links