E-MTAB-1357 - Transcription profiling by array of Arabidopsis thaliana Ler/Cvi recombinant inbred line (RIL) populations treated with low-light

Status
Released on 1 March 2013, last updated on 3 May 2014
Organism
Arabidopsis thaliana
Samples (126)
Array (1)
Protocols (7)
Description
To assess plasticity in genetic regulation of gene expression in Arabidopsis thaliana, genome wide gene expression variation was analyzed in a Ler/Cvi recombinant inbred line (RIL) population treated with low-light. The variation in expression could be explained for many genes by expression quantitative trait loci (eQTLs), which were compared to a previous genetical genomics study in the same untreated population. Please note Characteristics[StrainOrLine] is the population of 162 recombinant inbred lines between the accessions Ler x Cvi. Ler and Cvi are the names of the parental accessions.
Experiment types
transcription profiling by array, dye swap design, strain or line design
Contacts
Citation
Genetical genomics reveals large scale genotype-by-environment interactions in Arabidopsis thaliana. L. Basten Snoek, Inez R. Terpstra, René Dekter, Guido Van den Ackerveken and Anton. J.M. Peeters.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-1357.idf.txt
Sample and data relationshipE-MTAB-1357.sdrf.txt
Raw data (3)E-MTAB-1357.raw.1.zip, E-MTAB-1357.raw.2.zip, E-MTAB-1357.raw.3.zip
Processed data (1)E-MTAB-1357.processed.1.zip
Array designA-MEXP-2263.adf.txt
Links