E-MTAB-1356 - Transcription profiling by array of H. sapiens acute myeloid leukemia mononuclear cells to investigate associations with distinct clinical and genetic features and lack KIT mutations

Status
Released on 23 January 2013, last updated on 23 October 2015
Organism
Homo sapiens
Samples (99)
Array (1)
Protocols (5)
Description
The inv(16)(p13q22)/t(16;16)(p13;q22) in acute myeloid leukemia results in multiple CBFB-MYH11 fusion transcripts, with type A being most frequent. The biologic and prognostic implications of different fusions are unclear. We analyzed CBFB-MYH11 fusion types in 208 inv(16)/t(16;16) patients with de novo disease, and compared clinical and cytogenetic features and KIT mutation status between type A (n=182; 87%) and non-type A (n=26; 13%) patients. We derived a fusion-type-associated gene- global expression profile. Gene Ontology analysis of the differentially expressed genes revealed - among others - an enrichment of up-regulated genes involved in activation of caspase activity, cell differentiation and cell cycle control in non-type A patients.
Experiment types
transcription profiling by array, co-expression, ex vivo, individual genetic characteristics
Contact
Citation
inv(16)/t(16;16) acute myeloid leukemia with non-type A CBFB-MYH11 fusions associate with distinct clinical and genetic features and lack KIT mutations. Schwind S1, Edwards CG, Nicolet D, Mrózek K, Maharry K, Wu YZ, Paschka P, Eisfeld AK, Hoellerbauer P, Becker H, Metzeler KH, Curfman J, Kohlschmidt J, Prior TW, Kolitz JE, Blum W, Pettenati MJ, Dal Cin P, Carroll AJ, Caligiuri MA, Larson RA, Volinia S, Marcucci G, Bloomfield CD; Alliance for Clinical Trials in Oncology. , Europe PMC 23160462
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-1356.idf.txt
Sample and data relationshipE-MTAB-1356.sdrf.txt
Raw data (3)E-MTAB-1356.raw.1.zip, E-MTAB-1356.raw.2.zip, E-MTAB-1356.raw.3.zip
Array designA-AFFY-44.adf.txt
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