E-MTAB-1082 - DNA-seq with extra-long mate-pair of brain and testis samples from BN rat to improve scaffolding of reference rat genome

Status
Released on 15 May 2012, last updated on 3 May 2014
Organism
Rattus norvegicus
Samples (11)
Protocols (4)
Description
Extra-long mate-pair sequenicng of genome of BN Rats to improve scaffolding of reference rat genome
Experiment types
DNA-seq, optimization, replicate
Contact
Citations
Uncovering mammalian genome structure by extra long mate-pair next-generation sequencing. Sebastiaan van Heesch, Wigard Kloosterman, Nico Lansu, Frans-Paul Ruzius, Elizabeth Levandowsky, Clarence Lee, Marieke Simonis, Shiguo Zhou, Steve Goldstein, David Schwartz, Tim Harkins, Victor Guryev, Edwin Cuppen.
Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing. van Heesch S, Kloosterman WP, Lansu N, Ruzius FP, Levandowsky E, Lee CC, Zhou S, Goldstein S, Schwartz DC, Harkins TT, Guryev V, Cuppen E. :257 (2013), Europe PMC 23590730
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-1082.idf.txt
Sample and data relationshipE-MTAB-1082.sdrf.txt
Links