E-MTAB-1025 - ChIP-chip by array of yeast strains BY and RM after TSA treatment and recovery using anti-H3K14ac polyclonal antibody to investigate the stability of chromatin acetylation epi-polymorphisms

Status
Released on 21 September 2012, last updated on 3 June 2014
Organism
Saccharomyces cerevisiae
Samples (6)
Array (1)
Protocols (5)
Description
Strains BY and RM were cultivated with high concentrations of Trichostatin-A (TSA) and then let recover for >20 generations before re-profiling H3K14ac by ChIP as in Nagarajan et al. 2010 PLoS Genetics
Experiment types
ChIP-chip by array, binding site identification, in vivo, individual genetic characteristics, strain or line
Contact
Citation
Genetic Modifiers of Chromatin Acetylation Antagonize the Reprogramming of Epi-Polymorphisms. Anne-Laure Abraham, Muniyandi Nagarajan, Jean-Baptiste Veyrieras, Helene Bottin, Lars M. Steinmetz, Gael Yvert. PLoS Genet 8(9):e1002958 (2012), PMID:23028365
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-1025.idf.txt
Sample and data relationshipE-MTAB-1025.sdrf.txt
Raw data (2)E-MTAB-1025.raw.1.zip, E-MTAB-1025.raw.2.zip
Array designA-AFFY-116.adf.txt
R ExpressionSetE-MTAB-1025.eSet.r