E-MEXP-2441 - Transcription profiling of potato tubers for the investigation of methionine content

Status
Submitted on 10 November 2009, released on 20 November 2009, last updated on 3 June 2014
Organism
Solanum tuberosum
Samples (4)
Array (1)
Protocols (6)
Description
BSA pooling experiment for methionine content in a segrating diploid potato population (CxE). RNA of constrasting individuals for methionine content are pooled together based on their tuber methionine content and marker association with either or both of the identified QTLs for methionine content
Experiment types
transcription profiling by array, co-expression, individual genetic characteristics, loop
Contact
Citations
From QTL to candidate gene: a genetical genomics approach using a pooling strategy for simple and complex traits in potato.
From QTL to candidate gene: genetical genomics of simple and complex traits in potato using a pooling strategy. Kloosterman B, Oortwijn M, uitdeWilligen J, America T, de Vos R, Visser RG, Bachem CW. :158 (2010), PMID:20210995
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MEXP-2441.idf.txt
Sample and data relationshipE-MEXP-2441.sdrf.txt
Raw data (1)E-MEXP-2441.raw.1.zip
Array designA-MEXP-1737.adf.txt
R ExpressionSetE-MEXP-2441.eSet.r