E-MEXP-2280 - Transcription profiling of patients with four neurodegenerative disorders distinguishes tauopathies and identifies shared molecular pathways

Status
Released on 14 January 2010, last updated on 24 July 2015
Organism
Homo sapiens
Samples (31)
Array (1)
Protocols (2)
Description
We have constructed genome wide expression profiles from snap frozen post-mortem tissue from the medial temporal lobe of patients with four neurodegenerative disorders (5 AD, 5 PSP, 5 PiD and 5 FTD patients) and 5 control subjects. All patients were matched for age, gender, ApoE-epsilon and MAPT (tau) haplotype. From all groups a total of 790 probes were shown to be differently expressed when compared to control individuals. The results from these experiments were then used to investigate the correlations between clinical, pathological and molecular findings. From the 790 identified probes we extracted a gene set of 166 probes whose expression could discriminate between these disorders and normal ageing. This gene set can be further developed into an accurate microarray-based classification test. Furthermore, from this dataset we extracted a disease specific set of genes and identified two aging related transcription factors (FOXO1A and FOXO3A) as possible drug targets related to neurodegenerative disease.
Experiment types
transcription profiling by array, co-expression, disease state, replicate
Contact
Citation
Comprehensive mRNA expression profiling distinguishes tauopathies and identifies shared molecular pathways. Bronner IF, Bochdanovits Z, Rizzu P, Kamphorst W, Ravid R, van Swieten JC, Heutink P.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MEXP-2280.idf.txt
Sample and data relationshipE-MEXP-2280.sdrf.txt
Raw data (1)E-MEXP-2280.raw.1.zip
Processed data (1)E-MEXP-2280.processed.1.zip
Array designA-AFFY-44.adf.txt
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