E-MEXP-2138 - Transcription profiling of Listeria monocytogenes wild type and prfA, sigB and hfq deletion mutants grown in different media and at different temperatures

Status
Submitted on 18 April 2009, released on 24 April 2009, last updated on 3 June 2014
Organism
Listeria monocytogenes
Samples (39)
Array (1)
Protocols (9)
Description
Comparison of Listeria monocyotgenes gene expression in different growth conditions (exponential phase 37 degrees C, stationary phase 37 degrees C, exponential phase 30 degrees C, hypoxia, human blood, murine intestinal lumen) and different mutant strains (wild-type versus prfA, sigB and hfq deletion mutants).
Experiment types
transcription profiling by array, co-expression, ex vivo, growth condition, in vitro, in vivo
Contact
Citation
The Listeria transcriptional landscape from saprophytism to virulence. Alejandro Toledo-Arana, Olivier Dussurget, Georgios Nikitas, Nina Sesto, Helene Guet-Revillet, Damien Balestrino, Edmund Loh, Jonas Gripenland, Teresa Tiensuu, Karolis Vaitkevicius, Mathieu Barthelemy, Massimo Vergassola, Marie-Anne Nahori, Guillaume Soubigou, Beatrice Regnault, Jean-Yves Coppee, Marc Lecuit, Jorgen Johansson & Pascale Cossart. Nature 459:950-956 (2009)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MEXP-2138.idf.txt
Sample and data relationshipE-MEXP-2138.sdrf.txt
Raw data (1)E-MEXP-2138.raw.1.zip
Processed data (1)E-MEXP-2138.processed.1.zip
Array designA-AFFY-140.adf.txt
R ExpressionSetE-MEXP-2138.eSet.r