E-MEXP-1563 - Transcription profiling of rat mixed-tissue RNA samples using different labeling protocols

Status
Submitted on 7 April 2008, released on 16 April 2008, last updated on 2 May 2014
Organism
Rattus norvegicus
Samples (3)
Arrays (2)
Protocols (8)
Description
At one site (#10), three different batches of MTRRM (see E-TABM-16), were labeled with two different kits (Enzo and Affymetrix) and hybridized to two different Affymetrix Arrays (RAE230A and RAE230_2).
Experiment types
transcription profiling by array, co-expression, optimization, quality control testing
Contact
Citation
Use of diagnostic accuracy as a metric for evaluating laboratory proficiency with microarray assays using mixed-tissue RNA reference samples. Pine PS, Boedigheimer M, Rosenzweig BA, Turpaz Y, He YD, Delenstarr G, Ganter B, Jarnagin K, Jones WD, Reid LH, Thompson KL. Pharmacogenomics 9(11):1753-63 (2008)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MEXP-1563.idf.txt
Sample and data relationshipE-MEXP-1563.sdrf.txt
Raw data (1)E-MEXP-1563.raw.1.zip
Processed data (1)E-MEXP-1563.processed.1.zip
Additional data (1)E-MEXP-1563.additional.1.zip
Array designsA-AFFY-25.adf.txt, A-AFFY-43.adf.txt
R ExpressionSetE-MEXP-1563.eSet.r
Links