E-MEXP-155 - Transcription profiling of dissected neuroepithelium (Neur.) and from all other non-neuroepithelial tissues (N. Neur for Non Neuronal tissues) from six wild type (WT) and six Mdm4-null mouse embryos (KO)

Status
Released on 31 December 2004, last updated on 2 May 2014
Organism
Mus musculus
Samples (12)
Arrays (3)
Protocols (10)
Description
Total RNA was isolated from the dissected neuroepithelium (Neur.) and from all other non-neuroepithelial tissues (N. Neur for Non Neuronal tissues) from six wild-type (WT) and six Mdm4-null embryos (KO). Equal quantities of total RNA from single samples were used to obtain four RNA pools (WT-Neur, WT-N.Neur, KO-Neur, KO-N.Neur), each representing one of the experimental samples under analysis. Biotin labeled cRNA targets were obtained starting from 10ug of total RNA derived from the RNA pools. cDNA synthesis was performed with GIBCO SuperScript Custom cDNA Synthesis Kit, and biotin-labeled antisense RNA was transcribed in vitro using Ambion's In Vitro Transcription System, and including Bio-16-UTP and Bio-11-CTP (Enzo) in the reaction. Each labeled target was hybridized to two copies of the the complete Affymetrix MG-U174v2 chip set.
Experiment types
transcription profiling by array, individual genetic characteristics
Contacts
Myriam Alcalay <myriam.alcalay@ifom-ieo-campus.it>, Alain Martoriati, Eric Bellefroid, Gilles Doumont, Jean-Christophe Marine, Pier Giuseppe Pelicci
Citation
dapk1, encoding an activator of a p19ARF-p53 mediated apoptotic checkpoint, is a transcription target of p53. Alain Martoriati; Gilles Doumont; Myriam Alcalay; Eric Bellefroid; Pier Giuseppe Pelicci; Jean-Christophe Marine.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MEXP-155.idf.txt
Sample and data relationshipE-MEXP-155.sdrf.txt
Raw data (1)E-MEXP-155.raw.1.zip
Processed data (1)E-MEXP-155.processed.1.zip
Array designsA-AFFY-6.adf.txt, A-AFFY-7.adf.txt, A-AFFY-8.adf.txt
R ExpressionSetE-MEXP-155.eSet.r
Links