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E-MEXP-1456 - Transcription profiling of tomato plants at three time points in the light:dark cycle

Status
Released on 2 April 2009, last updated on 2 May 2014
Organism
Lycopersicon esculentum
Samples (4)
Array (1)
Protocols (8)
Description
We assayed the TOM2 microarray with target RNAs extracted from ZT0 (presumptive dawn), ZT8 (eight hours after dawn), ZT16 (presumptive dusk) and ZT20 (four hours after dusk), in Light/Dark (LD) conditions . The experimental design compared three time points to ZT0 used as a common reference: ZT8 vs. ZT0, ZT16 vs. ZT0 and ZT20 vs. ZT0. Sampling time is expressed as hours after dawn (Zeitgeber Time - ZT)
Experiment types
transcription profiling by array, co-expression, physiological process, replicate, time series
Contact
Citation
Diurnal and circadian rhythms in the tomato transcriptome and their modulation by cryptochrome photoreceptors. Facella P, Lopez L, Carbone F, Galbraith DW, Giuliano G, Perrotta G. PLoS One 3(7):e2798 (2008), PMID:18665253
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MEXP-1456.idf.txt
Sample and data relationshipE-MEXP-1456.sdrf.txt
Raw data (1)E-MEXP-1456.raw.1.zip
Processed data (1)E-MEXP-1456.processed.1.zip
Additional data (1)E-MEXP-1456.additional.1.zip
Array designA-MEXP-1055.adf.txt
R ExpressionSetE-MEXP-1456.eSet.r