E-MEXP-123 - Transcription profiling of migratory vs sedentary brown trout (Salmo trutta) and wild vs hatchery Atlantic salmon (Salmo salar)

Status
Released on 27 March 2006, last updated on 2 May 2014
Organism
Salmo salar, Salmo trutta
Samples (90)
Arrays (2)
Protocols (6)
Description
A total of 55 individuals were analysed: 15 migratory brown trout (Salmo trutta) individuals from the Redon river, 15 sedentary brown trout (S. trutta) individuals from the Redon river, 15 sedentary brown trout (S. trutta) individuals from the Chevenne river, and 10 Atlantic salmon (S. salar) individuals of a hatchery strain. For each individual, RNA was isolated twice from different parts of the same tissue, independently reverse transcribed into Cy3-labeled cDNA and then probed on two different slides, which leads to total of 110 single slide experiments.
Experiment types
transcription profiling by array, individual genetic characteristics
Contacts
Thomas Giger, Alexis Champigneulle, Carlo Largiader, Laurent Excoffier, Michael Hansen, Philip Day, Richard Powell
Citation
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MEXP-123.idf.txt
Sample and data relationshipE-MEXP-123.sdrf.txt
Raw data (1)E-MEXP-123.raw.1.zip
Processed data (1)E-MEXP-123.processed.1.zip
Array designsA-MEXP-77.adf.txt, A-MEXP-78.adf.txt
R ExpressionSetE-MEXP-123.eSet.r