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E-GEOD-83765 - RNA-seq of naive and primed ES cells

Status
Released on 15 July 2016, last updated on 24 July 2016
Organism
Homo sapiens
Samples (14)
Protocols (3)
Description
Here we propose a set of molecular criteria for evaluating the naive human pluripotent state. We show by RNA-seq that transcription of transposable elements provides a sensitive measure of the concordance between pluripotent stem cells and early human development. RNA-seq of 4 naive ES samples in 4i/LA, 3 naive ES samples in 5i/LA, 2 transgene-dependant naive ES cell samples, and 5 primed ES cell samples (in hESM)
Experiment type
RNA-seq of coding RNA 
Contacts
Didier Trono, Evarist Planet, Julien Duc, Marc Friedli
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
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