E-GEOD-8016 - Comparative genomic hybridization of chicken and Japanese quail

Status
Submitted on 5 June 2007, released on 6 November 2008, last updated on 2 May 2014
Organism
Coturnix japonica, Gallus gallus
Samples (6)
Array (1)
Protocols (7)
Description
Since Japanese quail and chicken belong to the same order Galliforms, DNA sequence of both species are highly conserved and proved to be applicable for various analyses each other. Quail are commonly used to address physiological questions for reasons of economy. To test whether chicken microarrays are useful to quail samples, we compared hybridization signals of chicken and quail genomic DNA on Affymetrix chicken genome array. Experiment Overall Design: Genomic DNA of female chicken and quail were extracted individually from liver of three birds and hybridized on Affymetrix microarrays. Samples were analyzed in triplicate set of array (three biological replicates).
Experiment types
comparative genomic hybridization by array, unknown experiment type
Contact
Citation
Thyrotrophin in the pars tuberalis triggers photoperiodic response. Nobuhiro Nakao, Hiroko Ono, Takashi Yamamura, Tsubasa Anraku, Tsuyoshi Takagi, Kumiko Higashi, Shinobu Yasuo, Yasuhiro Katou, Saburo Kageyama, Yumiko Uno, Takeya Kasukawa, Masayuki Iigo, Peter J Sharp, Atsushi Iwasawa, Yutaka Suzuki, Sumio Sugano, Teruyuki Niimi, Makoto Mizutani, Takao Namikawa, Shizufumi Ebihara, Hiroki R Ueda, Takashi Yoshimura. Nature 452(7185):317-22 (2008)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-8016.idf.txt
Sample and data relationshipE-GEOD-8016.sdrf.txt
Raw data (1)E-GEOD-8016.raw.1.zip
Processed data (1)E-GEOD-8016.processed.1.zip
Array designA-AFFY-103.adf.txt
R ExpressionSetE-GEOD-8016.eSet.r
Links