Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-78706 - RNAseq Reveals Virulence-Specific Host Responses to M. tuberculosis infection

Status
Released on 1 March 2016, last updated on 6 March 2016
Organism
Mus musculus
Samples (9)
Protocols (3)
Description
We infect bone marrow derived macrophages (BMDMs) with either a Hyper or Hypovirulent Mycobacterium tuberculolsis strain and assess the host response to these bacteria through RNAseq Uninfected BMDMs served as controls, BMDMs infected with Hypervirulent M.tb (designated R55), BMDMs infected with Hypovirulent m.tb (designated R50). 3 groups with 3 biological replicates, each analysed in triplicate.
Experiment type
RNA-seq of coding RNA 
Contacts
Gina Leiching <geo@ncbi.nlm.nih.gov>, B Baker, G R Leisching
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-78706.idf.txt
Sample and data relationshipE-GEOD-78706.sdrf.txt
Additional data (1)E-GEOD-78706.additional.1.zip
Links