E-GEOD-7463 - Transcription profiling of human ovarian tumors (43) from untreated patients prior to surgery vs. chemotherapy treated prior to surgery

Status
Submitted on 5 April 2007, released on 22 November 2008, last updated on 27 March 2012
Organism
Homo sapiens
Samples (43)
Array (1)
Protocols (5)
Description
Gene expression profiles of malignant carcinomas surgically removed from ovarian cancer patients pre-treated with chemotherapy (neo-adjuvant) prior to surgery group into two distinct clusters. One group clusters with carcinomas from patients not pre-treated with chemotherapy prior to surgery (C-L) while the other clusters with non-malignant adenomas (A-L). Although the C-L cluster is preferentially associated with p53 loss-of-function (LOF) mutations, the C-L cluster cancer patients display a more favorable clinical response to chemotherapy as evidenced by enhanced long-term survivorships. Experiment Overall Design: A set of 43 ovarian tumors was obtained from the Ovarian Cancer Institute (Atlanta). Tissue was collected at the time of surgery and preserved in RNAlater (Ambion, Austin, TX) within one minute of collection. Labeled probe was hybridized to the Affymetrix HG-U95Av2 arrays.
Experiment types
transcription profiling by array, co-expression, disease state
Contact
Citation
Evidence that p53-mediated cell-cycle-arrest inhibits chemotherapeutic treatment of ovarian carcinomas. Moreno CS, Matyunina L, Dickerson EB, Schubert N, Bowen NJ, Logani S, Benigno BB, McDonald JF. PLoS ONE 2(5):e441 (2007)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-7463.idf.txt
Sample and data relationshipE-GEOD-7463.sdrf.txt
Raw data (1)E-GEOD-7463.raw.1.zip
Processed data (1)E-GEOD-7463.processed.1.zip
Array designA-AFFY-1.adf.txt
R ExpressionSetE-GEOD-7463.eSet.r
Links