E-GEOD-7256 - Transcription profiling of rice to identify genes differentially expressed upon virulent infection by Magnaporthe grisea

Status
Submitted on 13 March 2007, released on 6 November 2008, last updated on 27 March 2012
Organism
Oryza sativa
Samples (8)
Array (1)
Protocols (14)
Description
Two-week old rice plants (cultivar Nipponbare) were treated with either Magnaporthe grisea (virulent isolate FR13) spore suspension in gelatine or gelatine alone. Two time points were taken (3 and 4 days post inoculation- dpi). Disease symptoms were not visible at 3 dpi whereas they were at 4 dpi. Two biological repeats were done. Experiment Overall Design: 8 arrays - rice
Experiment types
transcription profiling by array, unknown experiment type
Contact
sandrine balzergue
Citation
Susceptibility of rice to the blast fungus, Magnaporthe grisea. Cécile Ribot, Judith Hirsch, Sandrine Balzergue, Didier Tharreau, Jean-Loup Nottéghem, Marc-Henri Lebrun, Jean-Benoit Morel. J Plant Physiol 165(1):114-24 (2008)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-7256.idf.txt
Sample and data relationshipE-GEOD-7256.sdrf.txt
Raw data (1)E-GEOD-7256.raw.1.zip
Processed data (1)E-GEOD-7256.processed.1.zip
Array designA-AFFY-126.adf.txt
R ExpressionSetE-GEOD-7256.eSet.r
Links