Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-72266 - A validated gene regulatory network and GWAS identifies early regulators of T-cell associated diseases (ChIP-Seq)

Status
Released on 12 November 2015, last updated on 30 November 2015
Organism
Homo sapiens
Samples (11)
Protocols (3)
Description
For the purpose of the Gene Regulatory Network validation we have performed chromatin-immunoprecipitation sequencing (ChIP-Seq) experiment for three transcription factors; namely GATA3, MAF and MYB. ChIP-Seq of GATA3, MAF and MYB in human naïve CD4+ T-cells differentiated toward Th1 and Th2 until day 6. Matched INPUT samples were also sequenced for each condition.
Experiment type
ChIP-seq 
Contacts
Danuta Gawel <danuta.gawel@liu.se>, Aelita Konstantinell, Andreas Matussek, Antonio Lentini, Colm E Nestor, Daniel Eklund, Danuta R Gawel, Huan Zhang, Hui Wang, Ingrid Kockum, Jan Ernerudh, Janne Björkander, Johan Mellergård, Jordi Serra-Musach, Lars Alfredsson, Lina Mattson, Margaretha Stenmarker, Melissa Mendez, Miguel A Pujana, Mika Gustafsson, Mikael Benson, Miro Viitala, Omid Rasool, Riita Lahesmaa, Robert Blomgran, Robert Liljenström, Sandra Hellberg, Sergio Baranzini, Subhash Tripathi, Tomas Olsson
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-72266.idf.txt
Sample and data relationshipE-GEOD-72266.sdrf.txt
Processed data (1)E-GEOD-72266.processed.1.zip
Links