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E-GEOD-71530 - Fecal microbiota transplant rescues mice from sepsis

Status
Released on 30 July 2015, last updated on 20 August 2015
Organism
Mus musculus
Samples (56)
Array (1)
Protocols (6)
Description
The aim of this study was to test the hypothesis that replenishing the microbiota with a fecal microbiota transplant (FMT) can rescue a host from an advanced stage of sepsis. We developed a clinically-relevant mouse model of lethal polymicrobial gut-derived sepsis in mice using a 4-member pathogen community (Candida albicans, Klebsiella oxytoca, Serratia marcescens, Enterococcus faecalis) isolated from a critically ill patient. In order to mimic pre-operative surgical patient condition mice were exposed to food restriction and antibiotics. Approximately 18 hours prior to surgery food was removed from the cages and the mice were allowed only tap water. Each mouse received an intramuscular Cefoxitin injection 30 minutes prior to the incision at a concentration of 25 mg/kg into the left thigh. Mice were then subjected to a midline laparotomy, 30% hepatectomy of the left lateral lobe of the liver and a direct cecal inoculation of 200 µL of the four pathogen community. On postoperative day one, the mice were administered rectal enema. Mice were given either 1 ml of fecal microbiota transplant (FMT) or an autoclaved control (AC). This was again repeated on postoperative day two. Mice were then followed for mortality. Chow was restored to the cages on postoperative day two, approximately 45 hours after the operation. The injection of fecal microbiota transplant by enema significantly protected mice survival, reversed the composition of gut microflora and down-regulated the host inflammatory response. The cecum, left lobe of the liver, and spleen were isolated from mice for microarray processing with three or more replicates for six expermental conditions: non-treated control, SAHC POD1, SAHC.AC POD2, SAHC.FMT POD2, SAHC.AC POD7, SAHC.FMT POD7
Experiment type
transcription profiling by array 
Contacts
John C Alverdy <jalverdy@surgery.bsd.uchicago.edu>, Bana Jabri, Jennifer Defazio, Nikolai N Khodarev, Olga Zaborina, Sangman M Kim, Scott Christley
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-71530.idf.txt
Sample and data relationshipE-GEOD-71530.sdrf.txt
Raw data (1)E-GEOD-71530.raw.1.zip
Processed data (1)E-GEOD-71530.processed.1.zip
Additional data (1)E-GEOD-71530.additional.1.zip
Array designA-MEXP-1175.adf.txt
Links