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E-GEOD-70526 - Expression data from plant tissues during incompatible interaction between the rice host and its major pest, the Asian rice gall midge

Status
Released on 23 February 2016, last updated on 27 February 2016
Organism
Oryza sativa
Samples (6)
Array (1)
Protocols (7)
Description
During an incompatible or compatible interaction between rice (Oryza sativa) and the Asian rice gall midge (Orseolia oryzae), a lot of genetic reprogamming occurs in the plant host We used microarray to know the changes occuring in the resistant host (indica rice variety RP2068-18-3-5) when challenged by avirulent biotype of gall midge (GMB 1). During this incompatible interaction the resistance in the host is manifested by a hypersenstive response. Using microarray data, we identified distinct classes of up- and down-regulated genes during this process. Tissues from the stem region (feeding site of insect larvae) of the plants that were exposed to gall midge, were taken for RNA extraction and hybridization on Affymetric microarrays. For control, tissues were taken from the corresponding region of plants that were not exposed to gall midge.
Experiment type
transcription profiling by array 
Contacts
Suresh Nair <geo@ncbi.nlm.nih.gov>, J S Bentur, Ruchi Agarrwal
Citation
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-70526.idf.txt
Sample and data relationshipE-GEOD-70526.sdrf.txt
Raw data (1)E-GEOD-70526.raw.1.zip
Processed data (1)E-GEOD-70526.processed.1.zip
Array designA-AFFY-126.adf.txt
Links