Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-69943 - IHH microRNA response to genetically-reconstructed Zaire Ebola viruses [miRNA]

Status
Released on 18 June 2015, last updated on 20 June 2015
Organism
Homo sapiens
Samples (15)
Array (1)
Protocols (7)
Description
The purpose of this experiment was to obtain samples for mRNA analysis in IHH cells infected with Zaire Ebola virus and mutants: Zaire Ebola virus: This wild-type Ebola virus - strain Mayinga - was isolated from a fatal human case in Zaire (now known as the Democratic Republic of Congo) in 1976 Zaire Ebola virus, VP35 R312A possesses a R312A mutation in the VP35 protein. Zaire Ebola virus, delta sGP. Lacks the ability to produce non-structural protein, the secreted glycoprotein (sGP). Zaire Ebola virus, delta mucin. Lacks the mucin-like domain (MLD), which contains both N-linked and O-linked glycosylation sites, for the glycoproteins. Overview of Experiment: Cells: Immortalized Human Hepatocytes (IHH); seed 60,000 cells per well in a 24-well plate. Infected with a multiplicity of infection (MOI) of 0.5. After infection, 3x wash with PBS and replace with 5% FCS DMEM without NaPyr or NEAA. Time matched mocks done in triplicate from same cell stock as rest of samples. Time Points = 0, 6, 12, 24, 48, and 72 hrs post infection in triplicate.
Experiment type
transcription profiling by array 
Contacts
Yoshihiro Kawaoka <kawaokay@vetmed.wisc.edu>, Amie J Eisfeld, Katrina M Waters, Peter Halfmann
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-69943.idf.txt
Sample and data relationshipE-GEOD-69943.sdrf.txt
Raw data (1)E-GEOD-69943.raw.1.zip
Processed data (1)E-GEOD-69943.processed.1.zip
Array designA-GEOD-19730.adf.txt
Links