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E-GEOD-69508 - DNA microarray for STD pathogen detection

Status
Released on 31 December 2015, last updated on 11 January 2016
Organism
Alphapapillomavirus 13, Chlamydia trachomatis, Human herpesvirus 1, Human herpesvirus 8, Human papillomavirus type 11, Human papillomavirus type 16, Human papillomavirus type 18, Human papillomavirus type 31, Human papillomavirus type 33, Human papillomavirus type 35, Human papillomavirus type 39, Human papillomavirus type 58, Human papillomavirus type 6, Mycoplasma genitalium, Mycoplasma hominis, Neisseria gonorrhoeae, Ureaplasma
Samples (17)
Array (1)
Protocols (5)
Description
This work describes the development of the first microarray detection system that simultaneously identifies common pathogens associated with STDs from clinical samples, and paves the way for establishing a time-saving, accurate and high-throughput diagnostic tool. The target genes are 16S rRNA gene for N. gonorrhoeae, M. genitalium, M. hominism, and Ureaplasma, the major outer membrane protein gene (ompA) for C. trachomatis, the glycoprotein B gene (gB) for HSV; and the L1 gene for HPV. 34 probes that reproducibly detected multiple Legionella species with high specificity were included in the array.
Experiment type
other 
Contacts
Boyang Cao <boyangcao@nankai.edu.cn>, Pinliang Hu, Suwei Wang, Zhenyang Tian
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-69508.idf.txt
Sample and data relationshipE-GEOD-69508.sdrf.txt
Raw data (1)E-GEOD-69508.raw.1.zip
Processed data (1)E-GEOD-69508.processed.1.zip
Array designA-GEOD-20279.adf.txt
Links