Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-69340 - Expression data from cerebral cortices of bacTRAP transgenic mice

Status
Released on 30 June 2015, last updated on 19 August 2015
Organism
Mus musculus
Samples (27)
Array (1)
Protocols (5)
Description
We used microarrays of eight different cell types in cortex to conduct specificity index analysis for detailed cell type specific molecular profile. Cerebral cortices of adult bacTRAP transgenic mice were dissected out and subjected to polysomal immunoprecipitation with GFP antibody in accordance with the established protocol (Heiman et al. Cell 2008). Enriched RNAs for each cell type were extracted from corresponding bacTRAP mice and subjected to two cycle RNA amplification and biotin labeling following quality control. Biotin labeled RNAs were hybridized on Mouse Genome 430 2.0 microarray chips and the expression intensity of all 40,000 probesets were analyzed further.
Experiment type
transcription profiling by array 
Contacts
Awni Mousa <amousa@rockefeller.edu>, Nathaniel Heintz, Prerana Shrestha
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-69340.idf.txt
Sample and data relationshipE-GEOD-69340.sdrf.txt
Raw data (1)E-GEOD-69340.raw.1.zip
Additional data (1)E-GEOD-69340.additional.1.zip
Array designA-AFFY-45.adf.txt
Links