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E-GEOD-69333 - TET-catalyzed 5-hydroxymethylcytosine regulates gene expression in differentiating colonocytes and colon cancer

Status
Released on 9 December 2015, last updated on 12 December 2015
Organism
Homo sapiens
Samples (12)
Protocols (1)
Description
5-hydroxymethylcytosine (5-mC) and gene expression profiling of T84 cell differentiation; 5-hmC profiling of colon cancer colonocyte fractions T84 cell differentiation was monitored as cells formed confluent monolayers in tissue culture
Experiment types
methylation profiling by high throughput sequencing, RNA-seq of coding RNA 
Contacts
Christopher Mariani <christopher.mariani@gmail.com>, Alice Chuang, Christopher G Chapman, Christopher J Mariani, Feng Wu, John H Kwon, Jozef Madzo, Lucy A Godley, Marc B Bissonette
Citation
TET-catalyzed 5-hydroxymethylcytosine regulates gene expression in differentiating colonocytes and colon cancer. Chapman CG, Mariani CJ, Wu F, Meckel K, Butun F, Chuang A, Madzo J, Bissonette MB, Kwon JH, Godley LA. , PMID:26631571
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
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