Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-68899 - Transcriptomic analysis of Clostridium acetobutylicum biofilm cells adsorbed onto fibrous matrix in biobutanol production [I]

Status
Released on 15 May 2015, last updated on 25 May 2015
Organism
Clostridium acetobutylicum
Samples (8)
Array (1)
Protocols (8)
Description
Immobilization of Clostridium acetobutylicum B3 onto fibrous matrix by surface-adsorption was developed and applied to biobutanol production. The immobilized C. acetobutylicum B3 cells formed biofilm and showed dramatically improved butanol tolerance and production rate. DNA array-based transcriptional analysis of C.acetobutylicum B3 biofilm cells was conducted to elucidate the gene expression profile of the biofilm cells. Results showed that about 16% of the whole genome was differentially expressed. The most apparently differentially expressed genes were involved in amino acid transport and metabolism, inorganic ion transport and metabolism, energy production and conversion, and coenzyme transport and metabolism. Samples for biofilm cells and planktonic cells were withdrawn at four diffierent fermentation phases. The gene expression pattern of biofilm cells were investigated relative to that of planktonic cells from the same phase. The experiment was carried out twice independently. Cotton fibrous matrix (60 g/L) was used as biofilm carrier.
Experiment type
transcription profiling by array 
Contacts
Dong Liu, Hanjie Ying, Jiahui Xu, Yanyan Wang, Yong Chen
Files
Investigation descriptionE-GEOD-68899.idf.txt
Sample and data relationshipE-GEOD-68899.sdrf.txt
Raw data (1)E-GEOD-68899.raw.1.zip
Processed data (1)E-GEOD-68899.processed.1.zip
Array designA-GEOD-19013.adf.txt
Links