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E-GEOD-66828 - Amydala transcriptome changes in germ-free mice

Released on 9 July 2015, last updated on 19 August 2015
Mus musculus
Samples (12)
Protocols (2)
We sequenced mRNA from 12 samples extracted from mouse amygdala tissue to generate the first amygdala-specific murine transcriptome for germ-free mice (GF), conventionally raised controls (CON) and germ-free mice that have been colonized with normal microbiota from postnatal day 21 (exGF). Equal amounts of RNA from two to three animals were pooled to yield 4 samples per group (CON, GF, and exGF). Pairwise comparisons for CONvsGF, CONvsexGF, GFvsexGF were performed using DESeq2.
Experiment type
RNA-seq of coding RNA 
Alan E Hoban, Feargal Ryan, Gerard Clarke, John F Cryan, Marcus Claesson, Roman M Stilling, Timoth G Dinan
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-GEOD-66828.idf.txt
Sample and data relationshipE-GEOD-66828.sdrf.txt
Processed data (1)
Additional data (1)