E-GEOD-6638 - Transcription profiling by array of Arabidopsis mutant for ahg1 or ahg3 after treatment with ABA

Status
Released on 15 June 2008, last updated on 6 January 2012
Organism
Arabidopsis thaliana
Samples (8)
Array (1)
Protocols (7)
Description
The effect of ahg1 and ahg3 on the gene expression profiles is similar but some genes are differentially affected. Experiment Overall Design: To investigate the effect of ahg1 and ahg3 mutations, the genome wide gene expression profiles of germinating seedlings were examined. These mutations occurred in close but distinct PP2C genes. Stratified seeds were transferred to plates containing 0.5 uM ABA and allowed germinate at 23 °C under 16hr light 8hr dark conditions. After two days samples were collected for RNA extraction.
Experiment types
transcription profiling by array, unknown experiment type
Contact
Citation
ABA-Hypersensitive Germination1 encodes a protein phosphatase 2C, an essential component of abscisic acid signaling in Arabidopsis seed. Noriyuki Nishimura, Tomo Yoshida, Nobutaka Kitahata, Tadao Asami, Kazuo Shinozaki, Takashi Hirayama. , Europe PMC 17461784
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-6638.idf.txt
Sample and data relationshipE-GEOD-6638.sdrf.txt
Raw data (1)E-GEOD-6638.raw.1.zip
Processed data (1)E-GEOD-6638.processed.1.zip
Array designA-AFFY-2.adf.txt
R ExpressionSetE-GEOD-6638.eSet.r
Links