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E-GEOD-63917 - The carbonic anhydrase inhibitor ethoxzolamide inhibits the Mycobacterium tuberculosis PhoPR regulon and Esx-1 secretion and attenuates virulence

Status
Released on 20 May 2015, last updated on 19 August 2015
Organism
Mycobacterium tuberculosis
Samples (8)
Protocols (4)
Description
The purpose of this study was to examine how ethoxzolamide modulates gene M. tuberculosis gene expression at acidic pH. We observed that ethoxzolamide downregulates genes of the PhoPR regulon. Mtb strain CDC1551 was grown at 37C in T-25 vented, standing tissue culture flasks in 8 ml of buffered 7H9 medium seeded an initial OD of 0.2. Three conditions were examined with two biological replicates: 1) DMSO treated, pH 7.0, 2) DMSO treated, pH 5.7, 3) 40 µM ethoxzolamide treated, pH 5.7. The CDC1551(phoP::Tn) mutant was grown in a similar manner and treated with DMSO at pH 7.0 and 5.7. Following six days incubation, total bacterial RNA was extracted and analyzed as previously described.
Experiment type
RNA-seq of coding RNA 
Contacts
Robert B. Abramovitch <geo@ncbi.nlm.nih.gov>, Benjamin K Johnson, Christopher J Colvin, Robert B Abramovitch
Citation
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-63917.idf.txt
Sample and data relationshipE-GEOD-63917.sdrf.txt
Additional data (1)E-GEOD-63917.additional.1.zip
Links