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E-GEOD-63568 - An alternative pluripotent state confers interspecies chimaeric competency [WGBS]

Status
Released on 6 May 2015, last updated on 22 May 2015
Organism
Mus musculus
Samples (4)
Protocols (2)
Description
In this study, we show that by simple modulation of extrinsic signaling pathways, a new class of pluripotent stem cells, referred to as region selective epiblast stem cells (rsEpiSCs), could be efficiently derived from different stages of the early embryo. rsEpiSCs share features of primed pluripotency yet are distinct from EpiSCs in their molecular characteristics and ability to colonize post-implantation embryos. We performed whole-genome bisulfite sequencing (WGBS) experiments to compare the DNA methylation landscapes of conventional EpiSCs and rsEpiSCs. Compare the DNA methylation profiles in 2 pluripotent stem cell types (LP-EpiSCs and conventional EpiSCs) in mouse. Two replicates are examined for each cell type.
Experiment type
methylation profiling by high throughput sequencing 
Contacts
Christopher Benner <cbenner@salk.edu>, Chongyuan Luo, Yupeng He, Zhuzhu Zhang
Citation
An alternative pluripotent state confers interspecies chimaeric competency. Wu J, Okamura D, Li M, Suzuki K, Luo C, Ma L, He Y, Li Z, Benner C, Tamura I, Krause MN, Nery JR, Du T, Zhang Z, Hishida T, Takahashi Y, Aizawa E, Kim NY, Lajara J, Guillen P, Campistol JM, Esteban CR, Ross PJ, Saghatelian A, Ren B, Ecker JR, Belmonte JC.
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
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